Gene expression - DNA to protein

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DP Biology

Gene Expression

Gene expression diagram

All of the cells in your body have the same DNA, but they look and behave differently. Why do certain cells, for example, liver cells, "know" to make liver proteins and muscle proteins? The answer is gene expression. Gene expression is the process of creating a protein, known as a functional product. The importance of gene expression in biology is that it shows us how traits are developed in organisms, how they react/respond to their surroundings, and how diseases are developed.

What is Gene Expression?

Gene expression is when the DNA sequence of a gene is turned into a functional product. Though it's usually a protein, sometimes it can be an RNA molecule like tRNA or rRNA.

There are two main stages of gene expression:

Transcription: Copying DNA into RNA
Translation: Reading RNA to create a protein

Each cell regulates which genes are to be expressed when. This is how specialization and adaptation take place.

What is DNA made of?

We should review some fundamental principles of DNA before continuing. DNA is made of:

  • Nucleotides - These are the fundamental building blocks of DNA and consist of a phosphate group, a sugar group, and a nitrogenous base (A, T, G, C).
  • Double helix - a structure made of two strands coiled around each other. These strands are made of bases that pair together: A pairs with T and G pairs with C.
  • Genes - These are segments or sequences of DNA that code for a particular protein or RNA.

While DNA houses all the information the cells need, at a given point in time, only a certain segment of DNA (or some genes) is active or in use.

Transcribing Genes

Transcribing a gene is the first step in gene expression and is the process of copying a specific gene into a messenger RNA (mRNA) molecule.

The transcription step involves three actions:

Initiation

This is where the process starts. RNA polymerase (the enzyme responsible for synthesizing RNA) attaches to a DNA sequence called the promoter that is located close to the beginning of the gene. This is the cue that transcription is starting.

Elongation

In this step, the DNA is unwound by the RNA polymerase, and a complementary strand of RNA is synthesized by the enzyme. Unlike DNA, RNA has uracil (U) rather than thymine (T).

Termination

The RNA polymerase encounters a specific sequence called a terminator sequence, and transcription comes to an end. For eukaryotes, the end product of this transcription process is called pre-mRNA.

Processing in Eukaryotes

Before pre-mRNA can be called 'mature mRNA', some changes are made to it.

5' cap addition
This serves to protect the RNA from being degraded, and makes it easier for the ribosome to attach to the RNA strand.
3' Poly A tail
This also increases the stability of the RNA.
Splicing
The process of splicing involves the removal of the introns (the non-coding segments) and leaves the exons (the segments that code for something).

Prokaryotic organisms lack introns; therefore, their mRNA is ready to go as soon as transcription is completed.

Translation

Translation is the next step, where a protein is produced from the decoded mRNA.

Key Players

mRNA – contains the instructions.
Ribosomes – the place where proteins are made.
tRNA – delivers the right amino acids to the ribosome.
Amino acids – are the proteins' building blocks.

Steps for Translation

Initiation

The ribosome binds to mRNA at the start codon (AUG). The tRNA carrying the first amino acid (methionine) with the complementary anticodon is brought.

Elongation

The ribosome is transcribed as it moves along the mRNA, and codons are read. tRNA molecules continue to bring the amino acids to the ribosome in the right order to create a polypeptide chain.

Termination

The ribosome reaches one of the three stop codons (UAA, UAG, UGA). The polypeptide chain is then released, and it folds to create a protein with a specific function.

Proteins then go on to do many important functions, including serving as enzymes, structural components, transport, signaling, and regulation.

Control of Gene Expression

Only some genes are active at a particular time. In order to reduce energy, cells control the expression of genes.

Control of Genes in Prokaryotes - Operons

Prokaryotes have a mechanism known as operons, a set of genes with a single promoter.

Example: Lac operon in E. coli

  • If there is no lactose present, the repressor protein binds to the operator, and transcription cannot occur.
  • The presence of lactose means that it will bind the repressor and remove it, thus permitting transcription to occur.

The presence of operons means that bacteria can adapt to fluctuations in their surroundings.

Eukaryotic Gene Regulation

Eukaryotes have evolved a more complex means to control Gene Regulation than prokaryotes.

Transcriptional Regulation

Control of transcription factors (proteins) that 'switch the genes on' (active) or 'switch them off' (repressed) by attaching themselves to the DNA.

Post-transcriptional control

  • Alternative splicing of a single gene to produce different proteins.
  • The stability of mRNA in relation to the time that the mRNA is available for the process of translation.
  • The control of the translation process involves certain mRNAs that are either stored or dismantled, and this affects, either positively or negatively, the process of protein synthesis.

Epigenetics

Control of the expression of a gene is influenced by certain mechanisms, or control structures, with which the DNA sequence is not altered.

Mutations & Gene Expression

Control of the DNA Sequence of a gene is altered, and affects the expression of that gene: sequence changes, such as a single base change, and this is called a point mutation.

  • Control of the sequence of the DNA of a gene causes mutations that affect the expression of the gene, which are generally classified as point mutations.
  • Control of the base alters a certain sequence of DNA by either adding or removing a base, thus resulting in control of that gene (frameshift).
  • Chromosomal mutations are alterations in chromosome structure that occur on a large scale.

Mutations in regulatory sequences (promoters, enhancers) can increase or decrease the expression of a gene. Coding sequence mutations can alter the structure and function of a protein.

Some mutations can be dangerous or neutral, and in rare cases can be advantageous, resulting in evolutionary changes.

Summary Table

Stage Key Players Purpose Location
Transcription DNA, RNA polymerase, mRNA Copy DNA into RNA Nucleus (eukaryotes)
RNA processing Pre-mRNA, spliceosome, enzymes Make mature mRNA Nucleus
Translation mRNA, ribosome, tRNA, amino acids Synthesize protein Cytoplasm
Regulation Promoters, enhancers, repressors, transcription factors Control gene activity Nucleus / Cytoplasm
Epigenetic changes DNA methylation, histone modification Modify gene accessibility Nucleus

Significance of Gene Expression

Gene expression is important in biology because:

  • It helps to define cell differentiation. This can explain the difference between a nerve cell and a muscle cell.
  • It helps to regulate the responses to the external environment, such as turning on genes that are activated in response to stress.
  • Deregulated gene expression can lead to diseases such as cancer.
  • It allows the development of biotechnological applications such as the synthesis of insulin, vaccines, and genetically modified crops.

Manipulation of genes, treatment of diseases, and the exploration of the basics of life are all made possible by the understanding of gene expression.