Evolution and classification tree of life

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DP Biology

Classification and Cladistics

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You see trees, animals, insects, fungi, and things we can't see with the naked eye. A cat and a mushroom don't look the same. Bacteria are definitely not the same as human beings. How do people like you and me and scientists do this staggering range of life? Can we simply divide groups randomly? Certainly not.

This is a simple question. There is a lot of confusion and organization in this question. The confusion must be resolved. The first step in the study of evolution is the study of classification. The organization of the study is the first step in the study of evolution. The study of classification is the foundation of evolutionary biology.

What Is Classification?

Classification is the act of grouping entities. The entities are classified based on similarities and differences.

When a scientist has to classify an entity, there are certain features that the scientist has to consider. These features are not limited to the following:

  • Body structure
  • Type of cell
  • Pattern of nutrition
  • Method of reproduction
  • Cellular / Genetic

Classification helps us:

  • Identify entities in a correct way
  • Determine the degree of relationship in the evolutionary scale
  • Have a clear way to communicate with the world
  • And, to avoid confusion and disorganization in biology, classification is the goal.

Taxonomy

Taxonomy is the branch of biology that concerns the naming, describing, and classification of living things.

The current method of taxonomy is the work of 18th-century Swedish scientist Carl Linnaeus. He created a simple, structured method that is still used today.

Linnaeus categorized organisms based on the similarities of their physical traits. Modern science uses genetic data, but Linnaeus' method is still the foundation of classification.

Binomial Nomenclature

Linnaeus' method of Binomial Nomenclature is one of the most important parts of Taxonomy.

Binomial means "two names".

Every species has a scientific name that consists of:

Genus + Species

For example:

  • Humans: Homo sapiens
  • Lion: Panthera leo
  • Housefly: Musca domestica

Rules of Binomial Nomenclature:

  • The Genus name must start with a capital letter.
  • The species name must start with a lowercase letter.
  • The name must be italicized. (When handwritten, underline the name.)
  • Scientific names are the same everywhere in the world. Homo sapiens is used for humans, no matter what language is spoken.

The Hierarchical Classification System

Classification is organized in a hierarchical system, which means that living things are organized in levels and range from broad to specific.

The main taxonomic ranks are:

  • Domain
  • Kingdom
  • Phylum
  • Class
  • Order
  • Family
  • Genus
  • Species

As we go lower in the hierarchy:

  • The number of organisms is less.
  • The greater the similarities between organisms.

Humans are classified as the following:

  • Domain: Eukarya
  • Kingdom: Animalia
  • Phylum: Chordata
  • Class: Mammalia
  • Order: Primates
  • Family: Hominidae
  • Genus: Homo
  • Species: sapiens

At the level of species, organisms are quite alike and are able to interbreed and produce offspring that are also able to breed.

The Three Domains of Life

Contemporary systems of classification understand the division of three domains that take into account the structure of the cell and the molecular biology of organisms.

Bacteria

  • The cellular construction of these organisms is prokaryotic.
  • They don't have a nucleus
  • They are single-celled organisms
  • Walls of the cell are composed of peptidoglycan

Archaea

  • They also have prokaryotic cells
  • They don't have a nucleus
  • The composition of the cell walls is different from that of bacteria
  • They can survive in hostile conditions

Eukarya

  • They have eukaryotic cells
  • They have a true nucleus
  • They consist of different kingdoms such as the Animalia, Plantae, Fungi, and Protista.

The three domains of life are a system of classification that is based on a vast majority of genetic analyses.

Natural Classification vs Artificial Classification

Artificial Classification

Organisms are classified based on simple classification based on available and observable features such as size, shape, and habitat.

Example: Organizing animals into one of the groups of 'flying' or 'non-flying.'

This system can be easily utilized, but it does not account for the evolutionary relationships between the organisms.

Natural Classification

Natural classification takes into account a lot of different features, including:

  • Morphology
  • Embryology
  • Biochemistry
  • DNA sequences

Natural classification takes into consideration the evolutionary history and the common ancestry of organisms.

What is phylogeny?

Phylogeny is the study of the evolutionary history of organisms, and it uses the concept of common ancestry to show how the different organisms relate to one another.

Current scientific practices and methodologies aim to reflect phylogeny, grouping closely related organisms together because they evolved from the same ancestor.

Cladistics

Cladistics is classified by the common ancestor.

Cladistics does not group organisms by general agreement. Organisms are classified by facts in evolution.

In history, there has been a common ancestor for a particular species; this ancestor is not found in previous lineages.

Cladistics emphasizes the pathways and patterns of splitting in evolution.

Clades

Clades consist of ancestor groupings and evolutionary descendants.

All clones are considered mono-groups.

For example, all mammals share a common ancestor whose descendants also possess hair, mammary glands, and middle ear bones. Hence, mammals are considered a monophyletic group.

If a population is found to exclude descendants, it does not form a true group.

Cladograms

Cladograms are tree-like diagrams: they show the relationships among evolved organisms based on shared derived attributes.

In a closed area, you split the tree into 4 branches; each smaller branch of the larger is considered descended from the main.

Organisms in the closed area of the tree are separated in time from all organisms outside.

Some aspects may also be incorporated into the tree's design to exclude them. Only some organisms are related.

(Note: A few of the texts did not flow together properly. It is supposed to be clear that not all of them are true statements describing the subject being studied.)

In a cladogram, organisms that are closer together diverged from a common ancestor more recently.

Homologous vs. Analogous Structures

In cladistics, structures are central to the science.

Homologous structures

Are features that:

  • Have the same evolutionary origin
  • May have different purposes

Example: The forelimbs of humans, whales, and bats are made of the same bones. This indicates a common ancestor.

Analogous structures

Are features that:

  • Have different evolutionary origins
  • Have the same function

Example: The wings of birds and the wings of insects. They have the same function but are the result of different evolutionary origins.

In cladistics, homologous features are used almost to the exclusion of features that are merely analogous.

Molecular Basis of Modern Classification

In modern classification, molecular biology is of utmost importance.

Scientists look at:

  • DNA
  • RNA
  • Protein sequences

The more similar the sequences, the more the organisms are related.

For instance, humans and chimps share a significant amount of DNA.

In some instances, molecular data have been used to reclassify organisms in ways that contradict classification based exclusively on morphology.

What are Polyphyletic and Paraphyletic Groups?

Not all groups are actual clades.

  • A group is said to be monophyletic if it contains a common ancestor and all of the descendants of that ancestor.
  • In the case of paraphyletic groups, there is a common ancestor, but not all of the descendants.
  • In contrast, polyphyletic groups do not contain the most recent common ancestor of the members of the group.

Cladistics seeks to eliminate paraphyletic and polyphyletic groups.

Benefits of Classification and Cladistics

Classification involves more than just naming organisms. It enables scientists to:

  • Understand the scope of biodiversity
  • Predict the future characteristics of organisms
  • Study the evolution of organisms
  • Formulate strategies for the conservation of natural resources
  • Trace organisms that cause diseases

Cladistics makes classification better by focusing on evolutionary history instead of grouping organisms based on superficial similarities.

For instance, in the past, whales were classified as fish because they have an aquatic habitat. However, Cladistic analysis has proven that they are mammals that share an ancestry with terrestrial mammals.

This illustrates that the scientific community's understanding of the world is subject to change as more evidence emerges.

Evolution as the Foundational Principle of Classification

Darwin's theory of evolution by natural selection forms the basis of modern biology.

The theory of evolution explains the existence of similarities among living organisms.

If two species are found to possess several common features, the likely explanation is that they were derived from a common ancestor.

Classification, therefore, is a reflection of evolutionary pathways.

Conclusion

  • Classification of living organisms into meaningful categories helps to simplify and ease the understanding of the complexity of life forms.
  • Taxonomy is the scientific discipline that provides guidelines for the naming and grouping of organisms.
  • The system of binomial nomenclature provides a method for the assignment of names to organisms, ensuring that each organism has a single scientific name that is accepted universally.
  • The hierarchical structure classifies organisms within a range of levels that run from the domain to the species.
  • Within the domain classification of modern systems, three domains are recognized: Bacteria, Archaea, and Eukarya.
  • Organisms are classified in Cladistics on the basis of common features that are derived from a shared ancestry and are known as the derived characteristics.
  • A clade is defined as a grouping that consists of one common ancestor and all its descendants.
  • Cladistics provides a graphical representation of the relationship between organisms, which is known as a cladogram.
  • Molecular evidence has become increasingly important in establishing phylogeny.
  • In Biology, classification and cladistics are critical, as they integrate structure, molecular biology, and evolution.
  • When we accurately classify organisms, we are not simply tagging life, we are telling the story of evolution imprinted in every living cell.
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